This function returns the currently available screening methods.
Usage
listAvailableScreeningMethods(
x = c("all", "unsupervised", "supervised"),
show.wrapper = FALSE,
show.data.type = FALSE,
simplify = FALSE,
show.function = FALSE,
show.category = FALSE
)Arguments
- x
character string indicating whether to return all screening methods (
all), the unsupervised screening methods (unsupervised) or the supervised screening methods (supervised).- show.wrapper
logical indicating whether to return the ids for the supervised screening functions with or without wrapper functions.
- show.data.type
logical indicating whether to show the supported data types.
- simplify
logical indicating whether to format the data for readability.
- show.function
logical indicating whether to show the function name.
- show.category
logical indicating whether to show the internally given category.
Value
A data frame with at least two columns:
- id
the id of the screening method, to be used in the function calls
- name
the name of the screening method
Examples
#List available methods
listAvailableScreeningMethods()
#> id
#> 1 missing.value
#> 2 above.median
#> 3 above.minimum
#> 4 median
#> 5 variability
#> 6 pearson
#> 7 spearman
#> 8 kendall
#> 9 t.test.equal
#> 10 t.test.unequal
#> 11 t.test.paired
#> 12 w.test.ranksum
#> 13 w.test.paired
#> 14 anova.equal
#> 15 anova.unequal
#> 16 kruskal.wallis
#> 17 chisq.test
#> 18 coxph
#> 19 moderated.t
#> 20 moderated.F
#> 21 sam.test
#> name
#> 1 missing value ratio
#> 2 above-median frequency ratio
#> 3 above-minimum frequency ratio
#> 4 median value
#> 5 variability
#> 6 Pearson's product moment correlation coefficient t-test
#> 7 Spearman's rank correlation coefficient t-test
#> 8 Kendall's rank correlation coefficient t-test
#> 9 two-sample Student's pooled t-test
#> 10 two-sample t-test with the Welch modification to the degrees of freedom
#> 11 paired two-sample Student's t-test
#> 12 two-sample Mann-Whitney U-test
#> 13 paired two-sample Wilcoxon signed-rank test
#> 14 one-way analysis of variance F-test
#> 15 one-way analysis of variance F-test with Welch correction
#> 16 Kruskal-Wallis H-test
#> 17 Pearson's χ²-test
#> 18 Cox PH regression coefficient z-test
#> 19 empirical Bayes moderated t-test
#> 20 empirical Bayes moderated F-test
#> 21 significant analysis of microarrays permutation test
#List available methods and supported data types
listAvailableScreeningMethods(show.data.type = TRUE, simplify = TRUE)
#> id
#> 1 above.median
#> 2 above.minimum
#> 3 anova.equal
#> 4 anova.unequal
#> 5 chisq.test
#> 6 coxph
#> 7 kendall
#> 8 kruskal.wallis
#> 9 median
#> 10 missing.value
#> 11 moderated.F
#> 12 moderated.t
#> 13 pearson
#> 14 sam.test
#> 15 spearman
#> 16 t.test.equal
#> 17 t.test.paired
#> 18 t.test.unequal
#> 19 variability
#> 20 w.test.paired
#> 21 w.test.ranksum
#> name
#> 1 above-median frequency ratio
#> 2 above-minimum frequency ratio
#> 3 one-way analysis of variance F-test
#> 4 one-way analysis of variance F-test with Welch correction
#> 5 Pearson's χ²-test
#> 6 Cox PH regression coefficient z-test
#> 7 Kendall's rank correlation coefficient t-test
#> 8 Kruskal-Wallis H-test
#> 9 median value
#> 10 missing value ratio
#> 11 empirical Bayes moderated F-test
#> 12 empirical Bayes moderated t-test
#> 13 Pearson's product moment correlation coefficient t-test
#> 14 significant analysis of microarrays permutation test
#> 15 Spearman's rank correlation coefficient t-test
#> 16 two-sample Student's pooled t-test
#> 17 paired two-sample Student's t-test
#> 18 two-sample t-test with the Welch modification to the degrees of freedom
#> 19 variability
#> 20 paired two-sample Wilcoxon signed-rank test
#> 21 two-sample Mann-Whitney U-test
#> numerical categorical multiresponse survival
#> 1 x
#> 2 x
#> 3 x x
#> 4 x x
#> 5 x x
#> 6 x
#> 7 x
#> 8 x x
#> 9 x
#> 10 x x x x
#> 11 x x x
#> 12 x x x
#> 13 x
#> 14 x x x x
#> 15 x
#> 16 x
#> 17 x
#> 18 x
#> 19 x
#> 20 x
#> 21 x
#List available methods and function names
listAvailableScreeningMethods(show.function = TRUE)
#> id
#> 1 above.median
#> 2 above.minimum
#> 3 anova.equal
#> 4 anova.unequal
#> 5 chisq.test
#> 6 coxph
#> 7 kendall
#> 8 kruskal.wallis
#> 9 median
#> 10 missing.value
#> 11 moderated.F
#> 12 moderated.t
#> 13 pearson
#> 14 sam.test
#> 15 spearman
#> 16 t.test.equal
#> 17 t.test.paired
#> 18 t.test.unequal
#> 19 variability
#> 20 w.test.paired
#> 21 w.test.ranksum
#> name
#> 1 above-median frequency ratio
#> 2 above-minimum frequency ratio
#> 3 one-way analysis of variance F-test
#> 4 one-way analysis of variance F-test with Welch correction
#> 5 Pearson's χ²-test
#> 6 Cox PH regression coefficient z-test
#> 7 Kendall's rank correlation coefficient t-test
#> 8 Kruskal-Wallis H-test
#> 9 median value
#> 10 missing value ratio
#> 11 empirical Bayes moderated F-test
#> 12 empirical Bayes moderated t-test
#> 13 Pearson's product moment correlation coefficient t-test
#> 14 significant analysis of microarrays permutation test
#> 15 Spearman's rank correlation coefficient t-test
#> 16 two-sample Student's pooled t-test
#> 17 paired two-sample Student's t-test
#> 18 two-sample t-test with the Welch modification to the degrees of freedom
#> 19 variability
#> 20 paired two-sample Wilcoxon signed-rank test
#> 21 two-sample Mann-Whitney U-test
#> function
#> 1 rowAboveMedianFreqRatio
#> 2 rowAboveMinFreqRatio
#> 3 rowEqualVarOneWayAnova
#> 4 rowUnequalVarOneWayAnova
#> 5 rowPearsonChiSq
#> 6 rowCoxPH
#> 7 rowKendallCor
#> 8 rowKruskalWallis
#> 9 rowMedians
#> 10 rowMissingValueRatio
#> 11 rowModeratedOneWayAnova
#> 12 rowModeratedT
#> 13 rowPearsonCor
#> 14 rowSamStatistics
#> 15 rowSpearmanCor
#> 16 rowEqualVarT
#> 17 rowPairedT
#> 18 rowUnequalVarT
#> 19 rowVariability
#> 20 rowPairedWilcoxonT
#> 21 rowWilcoxonT