Pathway Level Analysis of Gene Expression (PLAGE) Scores

This function computes an enrichment score for each column vector in the input matrix x. See the **Details** section below for further information.

Usage

colPlage(x, rows = NULL, na.rm = TRUE, verbose = FALSE, ...)

x: a numerical matrix features-by-samples
rows: (optional) numerical vector giving the rows in x or character vector matching the row names in x to operate over. If missing or rows = NULL, all the rows in x are considered for the computation of the measures
na.rm: logical, whether to remove NA values from x before computation
verbose: Gives information about each calculation step. Default: FALSE.
...: further arguments to gsva

A numerical vector containing the computed score for each column in x.

It is a wrapper to gsva function.

Alessandro Barberis