Get Scorer — getScorer • sigscores

This function is a dispatcher for the score function selected in input.

Usage

getScorer(
  score = c("sum", "weightedSum", "mean", "trimmedMean", "weightedMean", "median",
    "mode", "midrange", "midhinge", "trimean", "iqr", "iqm", "mad", "aad", "ssgsea",
    "gsva", "plage", "zscore")
)

Arguments

score: character string, one of the supported measures

Value

A scoring function:

"sum": sumScorer
"weightedSum": weightedSumScorer
"mean": meanScorer
"trimmedMean": trimmedMeanScorer
"weightedMean": weightedMeanScorer
"median": medianScorer
"mode": modeScorer
"midrange": midrangeScorer
"midhinge": midhingeScorer
"trimean": trimeanScorer
"iqr": iqrScorer
"iqm": iqmScorer
"mad": madScorer
"aad": aadScorer
"ssgsea": ssgseaScorer
"gsva": gsvaScorer
"plage": plageScorer
"zscore": zscoreScorer

Details

The scoring functions are created via the generic scorer genericScorer which handles vector or matrix input by calling computeColMeasures.

Internally, computeColMeasures uses these functions to compute the measures: colSummations, colWeightedSums, colArithmeticMeans, colTrimmedMeans, colWeightedArithmeticMeans, colMidpoints, colModes, colMidranges, colMidhinges, colTrimeans, colIQRs, colIQMs, colMADs, colAADs, colSsgsea, colGsva, colPlage, colZscore

Author

Alessandro Barberis